PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00739.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SRS
Protein Properties Length: 334aa    MW: 36154.9 Da    PI: 8.6481
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00739.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702185.52.1e-571252874154
         DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaes 96 
                     +  C+dCGn+akk+C+++RCRtCCk rg+dCathvkstWvpa +rrerq+ +  +    +  +    +   kr+re+    +++++s ++s++++
  Jcr4S00739.10 125 SSRVCRDCGNRAKKECEYRRCRTCCKGRGYDCATHVKSTWVPAVRRRERQSVNGGSGGGGSCGSssgGACGGKRPREN---VTTTSNSFSTSNNNA 217
                    5678*********************************************99988776554444433455566777765...334444444444444 PP

         DUF702  97 kkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++ +            lP++v+++avfrc+rv++++ ge+e+aYq+ v+i+GhvfkG+LydqG++e
  Jcr4S00739.10 218 ATSFNFDNgsnyqdasfkqsLPSQVQAPAVFRCIRVTTINGGEAEVAYQAMVNISGHVFKGFLYDQGIDE 287
                    44444444446777888889***********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.9E-55127286IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.4E-25128170IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.101.1E-4155214No hitNo description
TIGRFAMsTIGR016246.3E-25238285IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
FLSQSNPPTV ATPTRISLTA TKTWLPPPPS TTTTTTTSTF PHDHTNMLGL HNIFFIAPPP  60
SSSATFQHQQ PISSSHQITT TINDQCNISN NQDSWTTLKR YQQESSFAKK DAFNIGEYNE  120
NSDSSSRVCR DCGNRAKKEC EYRRCRTCCK GRGYDCATHV KSTWVPAVRR RERQSVNGGS  180
GGGGSCGSSS GGACGGKRPR ENVTTTSNSF STSNNNAATS FNFDNGSNYQ DASFKQSLPS  240
QVQAPAVFRC IRVTTINGGE AEVAYQAMVN ISGHVFKGFL YDQGIDEKNL FPCISKVPSG  300
GRNRESTSPI VDPPNACPAS GCQRLLEGKA FATE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068664.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X1
RefseqXP_012068665.10.0PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2
SwissprotQ94CK95e-51LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A067L8V10.0A0A067L8V1_JATCU; Uncharacterized protein
STRINGPOPTR_0001s06500.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-48Lateral root primordium (LRP) protein-related